theortetically you can. As far as i understood the zenmuse can be powered up to 12s. I would double check though with support or the manual since the WKM powered from one source and the zenmuse powered from a second source are connected via Can-bus that share a common ground, but they probably thought of it just go sure if plan on using two sources.
I don really see a reason though to use two lipo one for the zenmuse and your copter setup. One lipo is much easier to maintain you have a voltage feedback from the one lipo and if you system lipo is drained it won't help if the zenmuse sill has power.
Other systems have extra lipo for the gimbal is mainly to give the gimbal a real 360 turn possibility and to keep the power clean for the servos. All that docent have to be considered when it comes to the zenmuse. Out of the box working the way it should be !
Boris