I have the same issue with all my Naza's, which are V1, but it is far more pronounced on the 550.
It will drift on initial take off and at the end of a forward run but eventually settles down to the spot it originally should have.
I can minimize it by going slow but on abrupt stops it's drifts as much as 5-6 feet, then returns.
I have attributed it to the fact that most GPS are said to be accurate to only 3 meters. It's way better then that.